STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCO7397Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (191 aa)    
Predicted Functional Partners:
RNC
Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
 
 
 0.721
VV0771
Hypothetical metal-dependent hydrolase; Predicted by orpheus program; predicted by glimmer program.
    
   0.676
AGR_PAT_-5
Putative transcriptional regulator, AraC/XylS family; Predicted by orpheus program; predicted by glimmer program.
 
     0.563
VV10447
Hypothetical trypsin-like serine protease; Predicted by orpheus program; predicted by glimmer program.
  
     0.494
VC1280
Putative deacetylase DA1; Predicted by orpheus program; predicted by glimmer program.
  
     0.477
PBPRA1347
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.463
VP0713
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.415
VPA0486
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.408
PBPRB0590
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.405
VPA0983
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.401
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.