Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S1065-2Hypothetical DNA-binding response regulatorTorR; Predicted by orpheus program; predicted by glimmer program. (233 aa)    
Predicted Functional Partners:
PBPRB0026
Hypothetical sensor protein TorS; Predicted by orpheus program; predicted by glimmer program.
 
0.993
VVA0633
Hypothetical sensor protein TorS; Predicted by orpheus program; predicted by glimmer program.
 
0.985
PLU4008
Putative sensor histidine kinase FexB; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.911
S1065
Putative DNA-binding response regulator TorR; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.903
PBPRB0060
Putative BaeS, Signal transduction histidine kinase; Predicted by orpheus program; predicted by glimmer program.
 
 
0.825
PLU4795
Putative sensor protein CpxA; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.817
PBPRA2177
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.805
STM2958
Putative sensor histidine kinase/response regulator; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.802
ECS4246
Putative sensor outer membrane protein EnvZ; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.793
VPA0149
Hypothetical two-component system sensor kinase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.792
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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