STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LL2032Hypothetical aminotransferase; Predicted by orpheus program; predicted by glimmer program. (374 aa)    
Predicted Functional Partners:
PA3862-2
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
     
 0.660
STM4101
Putative aspartokinase II/homoserine dehydrogenase, methionine-sensitive; Predicted by orpheus program; predicted by glimmer program; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.604
Y3718
Putative aspartokinase I/homoserine dehydrogenase; Predicted by orpheus program; predicted by glimmer program; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.604
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.596
C3973
Putative glutamate synthase, large subunit; Predicted by orpheus program; predicted by glimmer program.
     
 0.580
BH1728
Putative glutamate synthase, large subunit; Predicted by orpheus program; predicted by glimmer program.
     
 0.580
VP1942
Putative diaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.540
PM0150
Putative chorismate mutase/prephenate dehydratase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.500
PBPRB0029
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.481
BP0731
Putative carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
  
  
 0.472
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.