STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECS0397Putative beta-galactosidase; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 2 family. (1030 aa)    
Predicted Functional Partners:
EBGC
Putative evolved beta-D-galactosidase, beta subunit; Predicted by orpheus program; predicted by glimmer program.
   
 0.963
GALM-2
Hypothetical aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.939
GALM
Hypothetical protein; Converts alpha-aldose to the beta-anomer.
 
 
 0.937
Z5721
Putative alpha-galactosidase (melibiase); Predicted by orpheus program; predicted by glimmer program.
 
  
 0.925
ATU4665
Putative alpha-galactosidase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.924
S3323
Putative evolved beta-D-galactosidase, alpha subunit; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.918
PLU2275
Putative D-xylose isomerase; Predicted by orpheus program; predicted by glimmer program; Belongs to the xylose isomerase family.
    
 0.824
Y2886
Putative 1-phosphofructokinase; Predicted by orpheus program; predicted by glimmer program; Belongs to the carbohydrate kinase PfkB family.
  
    0.795
PLU0237
Putative glutamate-ammonia ligase; Predicted by orpheus program; predicted by glimmer program.
      
 0.772
ECS3950
Putative DNA-directed RNA polymerase, sigmasubunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
      
 0.770
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.