STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y3310-2Putative transketolase 1; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. (693 aa)    
Predicted Functional Partners:
tal
Putative transaldolase B; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
 
 0.998
STM3483
Putative ribulose-phosphate 3-epimerase; Predicted by orpheus program; predicted by glimmer program; Belongs to the ribulose-phosphate 3-epimerase family.
 0.978
PGI
Putative Glucose-6-phosphate isomerase; Predicted by orpheus program; predicted by glimmer program.
  
 0.977
T4469
Putative fructose-1,6-bisphosphatase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.957
STM4085
Putative GlpX protein; Predicted by orpheus program; predicted by glimmer program.
   
 0.956
S1294
Putative phosphoribosylpyrophosphate synthetase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
   
 
 0.951
S0616
Putative phosphoglucomutase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.942
PLU0957
Putative fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
  
 
 0.939
BA2516
Hypothetical fructose-1,6-bisphosphate aldolase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.939
rpiA
Putative ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
   
 0.936
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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