STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB0066Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (435 aa)    
Predicted Functional Partners:
PBPRA2366
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.742
WAVC
Conserved hypothetical protein; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.706
PA1078
Hypothetical FlgC flagellar basal-body rod protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the flagella basal body rod proteins family.
   
 
 0.695
PSPTO193
Putative flagellar basal body rod protein FlgC; Predicted by orpheus program; predicted by glimmer program; Belongs to the flagella basal body rod proteins family.
   
 
 0.695
YPO1265
Putative ATP-dependent helicase; Predicted by orpheus program; predicted by glimmer program.
    
   0.539
MOTX
Putative sodium-type flagellar protein MotX; Predicted by orpheus program; predicted by glimmer program.
  
     0.474
SO3256
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.444
YPO0729
Putative flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
    
 
 0.444
VV10234
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.429
hisS
Putative histidyl-tRNA synthetase; Predicted by orpheus program; predicted by glimmer program.
    
  0.423
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.