STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PBPRB0079Putative biotin sulfoxide reductase (bisC); Predicted by orpheus program; predicted by glimmer program; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (878 aa)    
Predicted Functional Partners:
TORD
Putative torD protein; Involved in the biogenesis of TorA. Acts on TorA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Belongs to the TorD/DmsD family. TorD subfamily.
 
 0.983
S1066
Hypothetical trimethylamine N-oxide reductase,cytochrome c-type subunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the TorC/TorY family.
 
 0.944
STM3823
Putative cytochrome c-type protein TorC; Predicted by orpheus program; predicted by glimmer program; Belongs to the TorC/TorY family.
 
 0.943
T3695
Putative cytochrome c-type protein TorC; Predicted by orpheus program; predicted by glimmer program; Belongs to the TorC/TorY family.
 
 0.942
STY3956
Putative trimethylamine-N-oxide reductase; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.917
TORA
Putative trimethylamine-N-oxide reductase; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.916
T3696
Putative trimethylamine-N-oxide reductase 1 precursor; Predicted by orpheus program; predicted by glimmer program; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 
0.915
HD0349
Putative nitrite reductase, Fe-S protein (NrfC); Predicted by orpheus program; predicted by glimmer program.
 
 
 0.843
STY1736
Putative tetrathionate reductase, subunit B; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.835
RS01174
Putative formate dehydrogenase, iron-sulfur subunit; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.828
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.