STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VV10059Hypothetical beta-hydroxydecanoyl-ACP dehydrase; Predicted by orpheus program; predicted by glimmer program. (163 aa)    
Predicted Functional Partners:
ECS4332
Putative 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Predicted by orpheus program; predicted by glimmer program.
 
 
   0.983
RS00767
Putative beta-ketoacyl-ACP synthase; Predicted by orpheus program; predicted by glimmer program; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
   
 0.961
FABG-2
Putative beta-ketoacyl-ACP reductase; Predicted by orpheus program; predicted by glimmer program.
 
     0.960
VP0886
Hypothetical exporter; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.919
ECS4335
Hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.914
RSP0364
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.914
RS00790
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.911
FABF
Putative 3-oxoacyl-ACP synthase; Predicted by orpheus program; predicted by glimmer program; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
   
 0.908
RS00785
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.908
ECS4337
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.901
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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