STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RS00779Putative histidine ammonia-lyase protein; Predicted by orpheus program; predicted by glimmer program. (518 aa)    
Predicted Functional Partners:
hutU
Putative urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
 0.997
CV0321
Putative imidazolonepropionase; Predicted by orpheus program; predicted by glimmer program; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
 
  
 0.964
VV1351
Putative histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
    
 0.936
ECS4332
Putative 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Predicted by orpheus program; predicted by glimmer program.
 
     0.931
CV0325
Putative histidine ammonia-lyase; Predicted by orpheus program; predicted by glimmer program; Belongs to the PAL/histidase family.
  
  
 
0.921
RS00785
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.919
ECS4331
Hypothetical acyl-coenzyme A synthetase; Predicted by orpheus program; predicted by glimmer program.
 
    0.913
RS00790
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.908
Z4854
Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
     0.899
VP0886
Hypothetical exporter; Predicted by orpheus program; predicted by glimmer program.
 
     0.875
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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