STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RSP0354Putative oxidoreductase protein; Predicted by orpheus program; predicted by glimmer program. (418 aa)    
Predicted Functional Partners:
ECS4335
Hypothetical protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
   
 0.872
VV10045
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.868
VP0886
Hypothetical exporter; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.850
RS00794
Putative acyl carrier protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.849
RS00785
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.846
RS00790
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.841
Z4854
Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
   
 0.840
ECS4331
Hypothetical acyl-coenzyme A synthetase; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.836
ECS4332
Putative 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Predicted by orpheus program; predicted by glimmer program.
 
     0.830
VV10059
Hypothetical beta-hydroxydecanoyl-ACP dehydrase; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.822
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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