STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y3215Putative sulfatase; Predicted by orpheus program; predicted by glimmer program. (520 aa)    
Predicted Functional Partners:
YDEM
Putative arylsulfatase regulator; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.917
SAV7254
Putative glucose-1-phosphateadenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
  
 0.839
SO4465
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.795
PBPRA1604
Hypothetical Fe-S oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.780
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.739
PBPRB0153
Hypothetical chondroitinase; Broad-specificity glycosaminoglycan lyase.
 
   
 0.723
YPO0840
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.683
YPO0843
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.670
PBPRB0138
Hypothetical outer membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.662
NANA
Putative N-acetylneuraminate lyase; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.627
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.