STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF2730Putative DeoR-family regulatory protein; Predicted by orpheus program; predicted by glimmer program. (258 aa)    
Predicted Functional Partners:
ECS4016
Putative phosphosugar isomerase; Predicted by orpheus program; predicted by glimmer program.
 
    0.804
Y2886
Putative 1-phosphofructokinase; Predicted by orpheus program; predicted by glimmer program; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.777
SCO5848
Putative tagatose 6-phosphate kinase; Predicted by orpheus program; predicted by glimmer program.
 
    0.730
VV20278
Putative acetyltransferase; Predicted by orpheus program; predicted by glimmer program.
    
   0.722
VVA0192
Putative PTS system, fructose-specific IIABC component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.709
VVA0188
Putative PTS system, fructose-specific IIABC component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.709
S3383
Putative PTS transport protein, component 2; Predicted by orpheus program; predicted by glimmer program.
 
    0.623
SF2252
PTS system, fructose-specific IIBC component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.607
PLU0836
Putative permease protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.579
Z4487
Putative PTS permease protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.561
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.