STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ECS4016Putative phosphosugar isomerase; Predicted by orpheus program; predicted by glimmer program. (387 aa)    
Predicted Functional Partners:
Z4488
Putative PTS permease protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.984
AGAF
Putative phosphotransferase system enzyme subunit, mannose/fructose-specific component IIA; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.979
NAGA
Putative N-acetylglucosamine-6-phosphatedeacetylase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.971
SCO5848
Putative tagatose 6-phosphate kinase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.952
SPYM3_14
Putative N-acetylglucosamine-6-phosphate deacetylase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.949
S3383
Putative PTS transport protein, component 2; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.936
Z4487
Putative PTS permease protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.919
PLU0836
Putative permease protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.916
PFKA
Putative 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
    
 0.910
AGAC
Putative N-acetylgalactosamine-specific IID component, PTS system; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.856
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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