STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDAPutative 4-hydroxy-2-oxoglutaratealdolase/2-deydro-3- deoxyphosphogluconate aldolase; Predicted by orpheus program; predicted by glimmer program. (214 aa)    
Predicted Functional Partners:
KDGK
Hypothetical 2-dehydro-3-deoxygluconokinase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.983
ECS4406
Hypothetical 2-dehydro-3-deoxygluconokinase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.935
C4337
Putative 2-dehydro-3-deoxygluconokinase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.930
YPO3990
Hypothetical carbohydrate kinase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.929
CPE2626
Putative aldolase; Predicted by orpheus program; predicted by glimmer program.
    
 0.925
T4112
Putative isocitrate lyase; Predicted by orpheus program; predicted by glimmer program.
     
 0.905
ATU5333
Putative 2-hydroxyacid dehydrogenase family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.903
C4971
Putative malate synthase A; Predicted by orpheus program; predicted by glimmer program; Belongs to the malate synthase family.
     
  0.900
BLR3166
Putative glyoxylate carboligase; Predicted by orpheus program; predicted by glimmer program; Belongs to the TPP enzyme family.
     
 0.900
ACEB
Putative malate synthase A; Predicted by orpheus program; predicted by glimmer program.
     
  0.900
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.