STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MT0455Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (183 aa)    
Predicted Functional Partners:
PBPRB0167
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.831
PBPRB0169
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the LysR transcriptional regulatory family.
       0.547
MA0415
Hypothetical oxidoreductase, short-chain dehydrogenase/reductase family; Predicted by orpheus program; predicted by glimmer program.
 
    0.518
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.509
BRA0777
Hypothetical short chain dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
    0.487
MINE
Putative cell division topological specificity factor; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.480
VV10255
Hypothetical outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
   
    0.477
PBPRA1229
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.426
FABG-9
Hypothetical oxidoreductase, short chaindehydrogenase/reductase family; Predicted by orpheus program; predicted by glimmer program.
 
    0.420
SF2652
Conserved hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
    0.414
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.