STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VV0075-2Hypothetical universal stress protein A; Predicted by orpheus program; predicted by glimmer program. (141 aa)    
Predicted Functional Partners:
VV0075
Putative universal stress protein A; Predicted by orpheus program; predicted by glimmer program.
  
     0.677
NRFF_2
Hypothetical formate-dependent nitrite reductase complex, NrfG protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.612
PBPRB0170
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.572
PLU4647
Hypothetical HemY protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.547
SF4071
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.508
VV2562
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.506
Z5317
Hypothetical uroporphyrin-III C-methyltransferase; Predicted by orpheus program; predicted by glimmer program.
  
     0.501
PBPRA2378
Putative MukF protein; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity.
  
     0.495
VVA0543
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
    0.475
mukE
Putative mukE protein; Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF.
  
     0.472
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.