STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Z0458Putative ATP-binding component of ABC transporter; Predicted by orpheus program; predicted by glimmer program. (349 aa)    
Predicted Functional Partners:
CJ0731
Putative permease of ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 0.998
ATU2148
Putative permease of ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.992
SMC01605
Putative periplasmic solute-bindingprotein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.990
ECS1570
Putative spermidine/putrescine ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.981
POTC
Putative spermidine/putrescine ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.961
EBIG1022
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.863
VV12600
Putative spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.830
Z1762
Putative permidine/putrescine ABC transporter,periplasmic spermidine/putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.828
SMC00775
Putative iron(III) ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.670
RSC0165
Putative transmembrane protein; Predicted by orpheus program; predicted by glimmer program.
 
      0.651
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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