STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBPRB0203Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (281 aa)    
Predicted Functional Partners:
CAIA
Putative acyl-CoA dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
 0.863
PP4064
Putative acyl-CoA dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
 0.824
SPYM3_13
Putative acetyl-CoA acetyltransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.817
PA3925
Putative acyl-CoA thiolase; Predicted by orpheus program; predicted by glimmer program; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.811
FADA
Putative Acetyl-CoA acetyltransferase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
 
 0.810
SF2420
Putative fatty oxidation complex, beta subunit; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
 
 0.802
XAC1584
Hypothetical enoyl-CoA hydratase/isomerase family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the enoyl-CoA hydratase/isomerase family.
  
     0.770
RSC0267
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.769
PLU4008
Putative sensor histidine kinase FexB; Predicted by orpheus program; predicted by glimmer program.
   
 0.742
PBPRB0026
Hypothetical sensor protein TorS; Predicted by orpheus program; predicted by glimmer program.
  
 0.735
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.