STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DAK1Putative dihydroxyacetone kinase; Predicted by orpheus program; predicted by glimmer program. (208 aa)    
Predicted Functional Partners:
SF1203
Putative dihydroxyacetone kinase; Predicted by orpheus program; predicted by glimmer program.
 0.999
PBPRB0217
Hypothetical phosphoenolpyruvate-protein phosphotransferase; Predicted by orpheus program; predicted by glimmer program; Belongs to the PEP-utilizing enzyme family.
 
 
 0.995
S1288
Hypothetical Glycerol metabolism operon regulatory protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.904
Y0404
Putative anaerobic glycerol-3-phosphate dehydrogenase, subunit A; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.851
GLPD
Putative aerobic glycerol-3-phosphate dehydrogenase; Predicted by orpheus program; predicted by glimmer program; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 
 0.824
SF2324
Hypothetical anaerobic glycerol-3-phosphatedehydrogenase, subunit B; Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor.
  
 
 0.810
PLU4838
Putative glycerol-3-phosphate dehydrogenase; Predicted by orpheus program; predicted by glimmer program; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
     
 0.801
GLPC
Putative anaerobic glycerol-3-phosphate dehydrogenase, subunit C; Predicted by orpheus program; predicted by glimmer program.
     
  0.800
RSC3129
Hypothetical sigma-54 dependent transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.697
SF2489
Putative coproporphyrinogen III oxidase, aerobic; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
   
    0.481
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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