STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Z4433Putative isomerase; Predicted by orpheus program; predicted by glimmer program. (445 aa)    
Predicted Functional Partners:
VPA0102
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
     0.983
VVA0079
Putative 1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.854
S4325
Putative maltodextrin phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 
 0.755
VC1280
Putative deacetylase DA1; Predicted by orpheus program; predicted by glimmer program.
  
     0.746
VP0713
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.730
PBPRB0585
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.729
VV1446
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.723
VV2376
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.703
VV10298
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.702
VVA1695
Hypothetical ParB family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the ParB family.
  
     0.700
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.