STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPA0102Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (439 aa)    
Predicted Functional Partners:
Z4433
Putative isomerase; Predicted by orpheus program; predicted by glimmer program.
     0.983
S4325
Putative maltodextrin phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 
 0.792
VC1280
Putative deacetylase DA1; Predicted by orpheus program; predicted by glimmer program.
  
     0.699
VV1446
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.689
PBPRB0585
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.671
VP0713
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.664
VV10298
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.654
VV2376
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.651
VVA1695
Hypothetical ParB family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the ParB family.
  
     0.621
VV2687
Putative DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.613
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.