STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BB1351Putative transcriptional regulator, GntR family; Predicted by orpheus program; predicted by glimmer program. (247 aa)    
Predicted Functional Partners:
RS03568
Putative carboxyphosphonoenolpyruvate phosphonomutase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
 
  
 0.817
YGAE
Putative LuxZ; Predicted by orpheus program; predicted by glimmer program.
  
     0.755
T3631
Hypothetical GntR-famly transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.718
S0112
Putative pyruvate dehydrogenase complexrepressor; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.583
YFCB
Putative adenine-specific methylase; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
   
   0.577
CBU0772-2
Putative methylcitrate synthase; Predicted by orpheus program; predicted by glimmer program; Belongs to the citrate synthase family.
 
    0.567
SMC04095
Putative Acyl-coenzyme A synthetase;AMP-(fatty) acid ligase; Predicted by orpheus program; predicted by glimmer program.
     
 0.511
S0075
Putative acetolactate synthase III, small subunit; Predicted by orpheus program; predicted by glimmer program.
   
    0.508
VPA0102
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.475
BA2349
Putative 2-methylcitrate dehydratase; Predicted by orpheus program; predicted by glimmer program.
       0.457
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.