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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCM1.35CConserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (125 aa)    
Predicted Functional Partners:
PBPRA1667
Putative Beta-ketoacyl synthase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.619
PBPRB0014
Hypothetical acyltransferase family protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.504
PBPRB1819
Hypothetical peptide synthetase; Predicted by orpheus program; predicted by glimmer program; Belongs to the ATP-dependent AMP-binding enzyme family.
  
     0.482
Y2402
Hypothetical thioesterase; Predicted by orpheus program; predicted by glimmer program.
  
     0.465
Y3071
Putative succinate dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
   
  
 0.450
SF4051
Putative BirA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.436
PBPRB1714
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the cytochrome P450 family.
  
   
 0.426
T0604
Hypothetical iron-sulfur cluster-binding protein NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
  
    0.416
PBPRB0644
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.416
PBPRB0647
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.411
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.