STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB5308Putative melibiose operon regulatory protein; Predicted by orpheus program; predicted by glimmer program. (168 aa)    
Predicted Functional Partners:
S3625
Hypothetical melibiose operon regulatory protein; Predicted by orpheus program; predicted by glimmer program.
     0.934
Z5512
Putative transcriptional regulator; Predicted by orpheus program; predicted by glimmer program.
  
     0.743
PA0780
Hypothetical transcriptional regulator, AraC/XylS family; Predicted by orpheus program; predicted by glimmer program.
  
     0.737
PBPRA1672
Hypothetical transcriptional regulator, AraC family; Predicted by orpheus program; predicted by glimmer program.
  
     0.733
RSP1115
Hypothetical transcriptional regulator, AraC/XylS family; Predicted by orpheus program; predicted by glimmer program.
  
     0.727
PBPRA0460
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.712
RSC0132
Hypothetical bacterial regulatory helix-turn-helix protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.679
VPA0938
Hypothetical AraC-family transcriptionalregulatory protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.635
PBPRB1013
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   0.633
CV4366
Putative transcriptional regulator, AraC/XylSfamily; Predicted by orpheus program; predicted by glimmer program.
  
     0.617
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.