STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S3625Hypothetical melibiose operon regulatory protein; Predicted by orpheus program; predicted by glimmer program. (139 aa)    
Predicted Functional Partners:
RB5308
Putative melibiose operon regulatory protein; Predicted by orpheus program; predicted by glimmer program.
     0.933
ATU4665
Putative alpha-galactosidase; Predicted by orpheus program; predicted by glimmer program.
 
     0.743
ECS3960
Putative oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
  
     0.602
C3458
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.536
VV10205-2
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.513
VV10205
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.496
Z1669
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.458
STY2923
Putative inner membrane protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.454
Z5721
Putative alpha-galactosidase (melibiase); Predicted by orpheus program; predicted by glimmer program.
 
     0.405
SCO5848
Putative tagatose 6-phosphate kinase; Predicted by orpheus program; predicted by glimmer program.
  
     0.401
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.