STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATU1060-2Putative response regulator protein; Predicted by orpheus program; predicted by glimmer program. (406 aa)    
Predicted Functional Partners:
PBPRB0060
Putative BaeS, Signal transduction histidine kinase; Predicted by orpheus program; predicted by glimmer program.
 
 0.957
PBPRB0026
Hypothetical sensor protein TorS; Predicted by orpheus program; predicted by glimmer program.
 
 0.952
PLU4008
Putative sensor histidine kinase FexB; Predicted by orpheus program; predicted by glimmer program.
 
 0.945
VVA0633
Hypothetical sensor protein TorS; Predicted by orpheus program; predicted by glimmer program.
 
 0.945
STM2958
Putative sensor histidine kinase/response regulator; Predicted by orpheus program; predicted by glimmer program.
 
0.913
VV11110
Hipothetical sensory box/GGDEF family protein; Predicted by orpheus program; predicted by glimmer program.
 
0.860
VP1755
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
0.842
PBPRB1011
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
0.839
PBPRA1827
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
0.837
SO2742
Putative Signal transduction histidinekinase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.832
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.