STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SGBEPutative sugar isomerase SgaE, AraD/FucA family; Predicted by orpheus program; predicted by glimmer program. (230 aa)    
Predicted Functional Partners:
SGBU
Putative hexulose-6-phosphate isomerase SgbU; Predicted by orpheus program; predicted by glimmer program.
  
 0.996
S4161
Putative xylulose kinase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.975
VCA0246
Putative SgaT protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.964
STM3483
Putative ribulose-phosphate 3-epimerase; Predicted by orpheus program; predicted by glimmer program; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.929
SGBH
Putative 3-hexulose-6-phosphate synthase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.922
STY0671
Putative citrate lyase, beta subunit; Predicted by orpheus program; predicted by glimmer program; Belongs to the HpcH/HpaI aldolase family.
   
    0.893
PTXA
Putative phosphotransferase systemmannitol/fructose-specific IIA domain; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.891
ATU4324
Putative carbohydrate kinase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.847
STM4382
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.837
STY0669
Hypothetical citX protein; Predicted by orpheus program; predicted by glimmer program.
   
    0.754
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.