Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RA0920Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (428 aa)    
Predicted Functional Partners:
hutU
Putative urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.874
CV0325
Putative histidine ammonia-lyase; Predicted by orpheus program; predicted by glimmer program; Belongs to the PAL/histidase family.
  
  
 0.820
RS00779
Putative histidine ammonia-lyase protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.820
VVA0030
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.718
hutG
Hypothetical formiminoglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
  
  
 0.503
PBPRB1421
Hypothetical arginase family protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the arginase family.
  
  
 0.503
PBPRB0063
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.467
SF2380
Hypothetical sugar nucleotide epimerase; Predicted by orpheus program; predicted by glimmer program.
  
    0.443
PBPRB0017
Hypothetical deacylase; Predicted by orpheus program; predicted by glimmer program.
 
     0.421
RSP1187
Putative N-acyl-D-aspartate/D-glutamate deacylase; Predicted by orpheus program; predicted by glimmer program.
 
     0.420
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.