STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STY2588Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (364 aa)    
Predicted Functional Partners:
T0506
Hypothetical amino acid racemase; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.914
PBPRA2731
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.908
ALR-2
Putative alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
  0.902
SO3354
Putative pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
  0.800
T4498-3
Putative arginine repressor; Predicted by orpheus program; predicted by glimmer program.
       0.773
PF0030
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.581
Z4997
Putative valine-pyruvate aminotransferase; Predicted by orpheus program; predicted by glimmer program.
     
  0.500
AAT
Putative aspartate aminotransferase; Predicted by orpheus program; predicted by glimmer program.
     
  0.500
YPO1028
Putative aminotransferase, class V; Predicted by orpheus program; predicted by glimmer program; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
     
  0.500
CV1435
Putative transcriptional regulator; Predicted by orpheus program; predicted by glimmer program; Belongs to the LysR transcriptional regulatory family.
       0.463
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.