STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STY2588Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (364 aa)    
Predicted Functional Partners:
T0506
Hypothetical amino acid racemase; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.914
PBPRA2731
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.908
T4501
Putative arginine deiminase; Predicted by orpheus program; predicted by glimmer program.
 
  
  0.836
ARCB
Putative ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
    
  0.805
ARCB-2
Putative ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
    
  0.805
argH
Putative argininosuccinase and n-acetylglutamate synthase; Predicted by orpheus program; predicted by glimmer program; In the N-terminal section; belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
     
  0.800
T4498-3
Putative arginine repressor; Predicted by orpheus program; predicted by glimmer program.
       0.773
PF0030
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.559
AAT
Putative aspartate aminotransferase; Predicted by orpheus program; predicted by glimmer program.
     
 0.507
Z4997
Putative valine-pyruvate aminotransferase; Predicted by orpheus program; predicted by glimmer program.
     
  0.499
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.