STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CV3549Putative catalase; Predicted by orpheus program; predicted by glimmer program; Belongs to the catalase family. (481 aa)    
Predicted Functional Partners:
MT0138
Hypothetical acyl dehydratase; Predicted by orpheus program; predicted by glimmer program.
   
 0.866
Y2168
Putative Ser protein kinase; Predicted by orpheus program; predicted by glimmer program.
   
  
 0.777
VV11252
Putative manganese superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 0.729
SODB
Putative superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 0.729
CPE0911
Putative glutathione peroxidase; Predicted by orpheus program; predicted by glimmer program; Belongs to the glutathione peroxidase family.
  
 
 0.702
AHPC
Putative antioxidant, AhpC/Tsa family; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.692
Y0988
Putative antioxidant, AhpC/Tsa family; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.692
PBPRB0339
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
   0.664
tal
Putative transaldolase B; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
   
 
 0.654
ILVI
Putative acetolactate synthase III, largesubunit; Predicted by orpheus program; predicted by glimmer program.
   
 0.649
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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