STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO1072Putative chitinase; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. Belongs to the GbpA family. (488 aa)    
Predicted Functional Partners:
CHID
Putative chitinase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.864
CHIA
Hypothetical protein with chitinase domain; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.864
VV0777
Putative chitinase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.835
TOXR
Transcription activator ToxR; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.769
PBPRB0541
Hypothetical chitinase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.723
VV2739
Putative endoglucanase-related protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.694
AGCG4342
Putative cyclic nucleotide binding protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.694
PLU1324
Putative beta-N-acetylhexosaminidase; Predicted by orpheus program; predicted by glimmer program.
  
   
 0.692
VV10298
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.624
Y0139
Putative DegS serine protease; Predicted by orpheus program; predicted by glimmer program.
      
 0.618
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.