STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KTRBPutative potassium uptake protein, Trk family; Predicted by orpheus program; predicted by glimmer program. (454 aa)    
Predicted Functional Partners:
EBIG2327
Putative potassium uptake protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.997
SO0695
Putative glutathione-regulated potassium-efflux system protein KefB; Predicted by orpheus program; predicted by glimmer program; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.747
Y4020
Putative potassium uptake protein TrkA; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.698
SO0060
Hypothetical sensor histidine kinase; Predicted by orpheus program; predicted by glimmer program.
     
 0.658
VV0578
Hypothetical potassium channel protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.654
VP1064
Putative potassium channel related protein; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.654
Z0841
Putative transcriptional regulatory protein KdpE; Predicted by orpheus program; predicted by glimmer program.
       0.553
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
   
   0.463
T4096
Putative Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.404
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.