STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YNFIHypothetical protein; Predicted by orpheus program; predicted by glimmer program. (194 aa)    
Predicted Functional Partners:
Y0864
Putative anaerobic dimethyl sulfoxide reductase, subunit A; Predicted by orpheus program; predicted by glimmer program; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.881
Y1515
Hypothetical ferredoxin-type protein NapF; Predicted by orpheus program; predicted by glimmer program.
 
     0.838
YNFH
Putative anaerobic dimethyl sulfoxide reductase subunit C; Predicted by orpheus program; predicted by glimmer program.
 
     0.780
SO1587
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.633
TORA
Putative trimethylamine-N-oxide reductase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.608
STY3956
Putative trimethylamine-N-oxide reductase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.602
T3696
Putative trimethylamine-N-oxide reductase 1 precursor; Predicted by orpheus program; predicted by glimmer program; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.595
S3818
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.565
PBPRB0079
Putative biotin sulfoxide reductase (bisC); Predicted by orpheus program; predicted by glimmer program; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.533
YJIG
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.509
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.