STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Y1515Hypothetical ferredoxin-type protein NapF; Predicted by orpheus program; predicted by glimmer program. (185 aa)    
Predicted Functional Partners:
STM1084
Putative sulfite reductase; Part of a sulfur-relay system.
   
 
 0.899
YNFI
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
     0.838
PBPRB0647
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.821
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.815
PBPRB0644
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.806
SF2290
Putative periplasmic nitrate reductase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
   
 0.780
Z3463
Putative periplasmic nitrate reductase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
   
 0.780
STY2484
Hypothetical ferredoxin-type protein napG; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.777
YPO3037
Putative periplasmic nitrate reductase,cytochrome c-type protein; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
 
     0.765
AGR_L_91
Hypothetical periplasmic nitrate reductase small subunit precursor; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
 
     0.761
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.