STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
R01644Hypothetical 2-hydroxychromene-2-carboxylateisomerase family protein; Predicted by orpheus program; predicted by glimmer program. (218 aa)    
Predicted Functional Partners:
S2664
Hypothetical arsenate reductase; Predicted by orpheus program; predicted by glimmer program; Belongs to the ArsC family.
   
 
 0.823
PP1645
Putative arsenate reductase ArsC; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.823
ATU2380
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.616
EBIG442
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.546
PBPRB0336
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
       0.492
YPO0284
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.439
XAC1354
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
   
    0.432
PBPRB1551
Hypothetical thioredoxin reductase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.419
PA1078
Hypothetical FlgC flagellar basal-body rod protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the flagella basal body rod proteins family.
    
   0.414
EBIG853
Hypothetical flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.414
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.