STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGCG4334Hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (114 aa)    
Predicted Functional Partners:
STM0136
Putative SecA, preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
    
 
 0.829
SO0052
Putative protein-transport protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
    
 
 0.800
tig
Similar to Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
    
 
 0.794
CSAP
Hypothetical alkaline phosphatase; Predicted by orpheus program; predicted by glimmer program.
  
     0.774
PBPRB1686
Hypothetical SecA-related protein; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.703
PHNC
Hypothetical phosphonate ABC transporter,ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.578
PP5327
Putative phosphate ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.557
SO4176
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.555
Z4656
Hypothetical Smf protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.538
T0582
Putative glycerophosphoryl diester phosphodiesterase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.537
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.