STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Z5025Putative mannitol operon repressor; Predicted by orpheus program; predicted by glimmer program. (176 aa)    
Predicted Functional Partners:
C4416
Putative mannitol-specific IIABC component, PTS system; Predicted by orpheus program; predicted by glimmer program.
 
   
 0.876
Y1488
Putative phosphocarrier protein HPr; Predicted by orpheus program; predicted by glimmer program.
    
 
 0.839
SF3634
Putative mannitol-1-phosphate 5-dehydrogenase; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.821
VPA1643
Hypothetical maltose operon periplasmic protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.755
VVA0266
Hypothetical phosphatidylglycerophosphatase B; Predicted by orpheus program; predicted by glimmer program.
  
     0.700
FRUB
Putative PTS system, fructose-specific IIA/FPR component; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.666
VV21143
Putative outer membrane protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.657
VVA0054
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.656
PBPRA1013
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0319 family.
  
     0.651
VV2720
ompL_phopr porin-like protein L precursor; Forms pores that allow passive diffusion of small molecules across the outer membrane; Belongs to the Gram-negative porin family.
  
     0.649
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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