STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SF3634Putative mannitol-1-phosphate 5-dehydrogenase; Predicted by orpheus program; predicted by glimmer program. (381 aa)    
Predicted Functional Partners:
C4416
Putative mannitol-specific IIABC component, PTS system; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.999
PFKA
Putative 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
    
 0.923
YPO2263
Putative mannose-6-phosphate isomer; Predicted by orpheus program; predicted by glimmer program; Belongs to the mannose-6-phosphate isomerase type 1 family.
    
 0.907
STM4085
Putative GlpX protein; Predicted by orpheus program; predicted by glimmer program.
     
 0.905
Z2756
Hypothetical phosphatase; Predicted by orpheus program; predicted by glimmer program.
    
  0.904
T2471
Hypothetical ROK family protein; Predicted by orpheus program; predicted by glimmer program.
     
 0.902
T4469
Putative fructose-1,6-bisphosphatase; Predicted by orpheus program; predicted by glimmer program.
     
  0.900
FRUB
Putative PTS system, fructose-specific IIA/FPR component; Predicted by orpheus program; predicted by glimmer program.
  
 0.885
Z5025
Putative mannitol operon repressor; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.821
VVA0188
Putative PTS system, fructose-specific IIABC component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.681
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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