STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S1885Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (295 aa)    
Predicted Functional Partners:
VV2687
Putative DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
    0.717
Y0323
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.593
PBPRA2168
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the UPF0267 family.
  
     0.584
STY2923
Putative inner membrane protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
   
 0.544
PBPRA0127
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.496
PBPRA3316
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.492
VV21005
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.487
VVA1499
Putative outer membrane protein TolC; Predicted by orpheus program; predicted by glimmer program.
 
     0.472
PBPRB1950
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.457
VV20202
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.455
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.