STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VP1997Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program. (405 aa)    
Predicted Functional Partners:
PHNL
Putative ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.995
VVA1500
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.966
VPA0560
Putative ABC transporter ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.935
STY1258
Putative ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.915
VV21004
Putative ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.913
VVA1499
Putative outer membrane protein TolC; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.876
VPA0871
Putative ABC transporter; Predicted by orpheus program; predicted by glimmer program.
 
 0.869
AGR_PAT_-3
Putative ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 0.850
VV21005
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
    
0.831
Y1100
Putative ABC transporter ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
     0.761
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.