STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VVA1499Putative outer membrane protein TolC; Predicted by orpheus program; predicted by glimmer program. (432 aa)    
Predicted Functional Partners:
VVA1500
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.973
SO4090
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
  
  
  0.921
STY3364
Putative outer membrane protein TolC; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.919
CBU1094-2
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.911
PBPRB1758
Hypothetical ABC-transporter outer membrane component; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.911
VV21005
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.906
AGR_C_45
Putative multidrug efflux membrane fusion protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.902
PHNL
Putative ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.901
VV1128
Hypothetical HlyD family secretion protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.900
VP1997
Conserved hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.876
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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