STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFUB_1Putative ABC transporter, permease; Predicted by orpheus program; predicted by glimmer program. (698 aa)    
Predicted Functional Partners:
AFUA_2
Putative iron(III) ABC transporter, periplasmic iron-compound-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.989
ATU4786
Putative iron(III) ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.983
AGR_C_34
Putative ABC transporter, periplasmic iron-compound-binding protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.924
SMC00775
Putative iron(III) ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.906
VPA0825
Hypothetical phosphoglycerate transport regulatory protein PgtC; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.904
PM0049
Putative iron(III) ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the ABC transporter superfamily.
 
 
 0.896
SMC01605
Putative periplasmic solute-bindingprotein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.579
ECS0070
Putative thiamine ABC transporter; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.
  
  
 0.532
STY0125
Putative ABC-type thiamine transport system,periplasmic component; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.479
PHNL
Putative ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program.
  
    0.468
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.