STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFUA_2Putative iron(III) ABC transporter, periplasmic iron-compound-binding protein; Predicted by orpheus program; predicted by glimmer program. (344 aa)    
Predicted Functional Partners:
AFUB_1
Putative ABC transporter, permease; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.989
ATU4786
Putative iron(III) ABC transporter, ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.956
SMC00775
Putative iron(III) ABC transporter, permease protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.952
AGR_C_34
Putative ABC transporter, periplasmic iron-compound-binding protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.949
PM0049
Putative iron(III) ABC transporter, ATP-binding protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the ABC transporter superfamily.
 
 
 0.913
VPA0825
Hypothetical phosphoglycerate transport regulatory protein PgtC; Predicted by orpheus program; predicted by glimmer program.
  
     0.742
UHPC-2
Putative regulatory protein UhpC; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.680
T0111
Putative thiamine ABC transporter,permease protein; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.625
Z5410
Putative membrane protein; Predicted by orpheus program; predicted by glimmer program.
 
    0.540
STM2283
Putative glycerol-3-phosphate transporter; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.430
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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