STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
UHPC-2Putative regulatory protein UhpC; Predicted by orpheus program; predicted by glimmer program. (441 aa)    
Predicted Functional Partners:
UHPB
Putative UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific; Predicted by orpheus program; predicted by glimmer program.
  
 
  0.905
UHPC
Putative UhpC, sugar phosphate permease; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.901
AFUA_2
Putative iron(III) ABC transporter, periplasmic iron-compound-binding protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.680
ECS4605
Hypothetical signal transduction histidine kinase; Predicted by orpheus program; predicted by glimmer program.
  
    0.553
UHPA
Putative transcriptional regulator UhpA; Predicted by orpheus program; predicted by glimmer program.
     
 0.552
T0582
Putative glycerophosphoryl diester phosphodiesterase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.504
Y0047
Putative ATP:glycerol 3-phosphotransferase (Glycerokinase)(GK); Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
  
 0.443
GLPF
Putative glycerol uptake facilitator protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the MIP/aquaporin (TC 1.A.8) family.
 
  
 0.432
VPA0825
Hypothetical phosphoglycerate transport regulatory protein PgtC; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.430
C2323
Putative tyrosine-specific transport protein; Predicted by orpheus program; predicted by glimmer program.
  
     0.417
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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