STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECS4605Hypothetical signal transduction histidine kinase; Predicted by orpheus program; predicted by glimmer program. (537 aa)    
Predicted Functional Partners:
UHPA
Putative transcriptional regulator UhpA; Predicted by orpheus program; predicted by glimmer program.
 
 
  0.994
YPO1576
Two-component system, NarL family, uhpT operon response regulator UhpA; Predicted by orpheus program; predicted by glimmer program.
 
 
   0.793
PM1810
Putative nitrate/nitrite response regulator protein; Predicted by orpheus program; predicted by glimmer program.
 
 
   0.781
Y2443
Putative transcriptional regulator, LuxR family; Predicted by orpheus program; predicted by glimmer program.
 
 
   0.754
XAC4180
Putative transcriptional regulator, LuxR family; Predicted by orpheus program; predicted by glimmer program.
 
 
   0.628
UHPC-2
Putative regulatory protein UhpC; Predicted by orpheus program; predicted by glimmer program.
  
    0.552
MK0053
Putative ammonium permease; Predicted by orpheus program; predicted by glimmer program.
       0.442
RS03959
Hypothetical tetrathionate reductasecomplex: response regulator; Predicted by orpheus program; predicted by glimmer program.
  
     0.421
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.