STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UHPAPutative transcriptional regulator UhpA; Predicted by orpheus program; predicted by glimmer program. (209 aa)    
Predicted Functional Partners:
ECS4605
Hypothetical signal transduction histidine kinase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.994
STM2958
Putative sensor histidine kinase/response regulator; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.913
PLU4008
Putative sensor histidine kinase FexB; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.879
PBPRB0026
Hypothetical sensor protein TorS; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.873
VVA0633
Hypothetical sensor protein TorS; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.858
PBPRB0060
Putative BaeS, Signal transduction histidine kinase; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.858
T0379
Hypothetical nitrate/nitrite sensor protein NarQ; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.803
UHPB
Putative UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.789
infB
Putative initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
 
 0.697
PBPRB1011
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program.
 
 
 
 0.559
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.