STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
tnaA-2Putative tryptophanase; Predicted by orpheus program; predicted by glimmer program; Belongs to the beta-eliminating lyase family. (466 aa)    
Predicted Functional Partners:
trpB
Putative tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
 0.910
PLU2467
Putative tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
 0.909
tnaA
Putative tryptophanase; Predicted by orpheus program; predicted by glimmer program; Belongs to the beta-eliminating lyase family.
  
  
 
0.903
PBPRA1344
Putative TnaA, Tryptophanase; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.901
PBPRA1345
Hypothetical tryptophan-specific transport protein; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.547
TORA
Putative trimethylamine-N-oxide reductase; Predicted by orpheus program; predicted by glimmer program.
      
 0.425
STY0472
Putative 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme; Predicted by orpheus program; predicted by glimmer program.
    
   0.423
STY2140
Putative ThiJ/PfpI-family thiamine biogenesisprotein; Predicted by orpheus program; predicted by glimmer program.
    
   0.423
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.