STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLU1546Hypothetical malate oxidoreductase; Predicted by orpheus program; predicted by glimmer program. (579 aa)    
Predicted Functional Partners:
XAC1542
Putative fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
 
 0.942
RS03529
Putative fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
 
 0.941
ECS2000
Putative pyruvate oxidoreductase; Predicted by orpheus program; predicted by glimmer program.
    
 0.940
MDH
Putative malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate.
  
 0.931
Y1944
Putative pyruvate kinase I; Predicted by orpheus program; predicted by glimmer program; Belongs to the pyruvate kinase family.
  
 0.928
PYKA
Putative pyruvate kinase II; Predicted by orpheus program; predicted by glimmer program; Belongs to the pyruvate kinase family.
  
 0.928
T3267
Putative oxaloacetate decarboxylase, alpha subunit; Predicted by orpheus program; predicted by glimmer program.
    
 0.923
HD0783
Putative oxaloacetate decarboxylase,alphasubunit; Predicted by orpheus program; predicted by glimmer program.
    
 0.923
EF1354
Putaive pyruvate dehydrogenase E1 component, beta subunit; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.922
YPO1383
Putative formate acetyltransferase; Predicted by orpheus program; predicted by glimmer program.
   
 
 0.921
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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