STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VV20400Hypothetical alpha-amylase; Predicted by orpheus program; predicted by glimmer program. (474 aa)    
Predicted Functional Partners:
PULA
Putative pullulanase precursor; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 13 family.
 
 0.965
VVA0079
Putative 1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.939
PMT1397
Putative glycogen operon protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.932
VV21226
Putative glycogen protein GlgX; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.932
VVA0078
Putative 4-alpha-glucanotransferase; Predicted by orpheus program; predicted by glimmer program.
 
 
 0.932
PBPRB0321
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.926
S4325
Putative maltodextrin phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 0.926
T2462
Putative maltodextrin glucosidase; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.920
DEXA
Putative glycosidase; Predicted by orpheus program; predicted by glimmer program.
  
  
 0.911
XCC0748
Putative alpha-amylase; Predicted by orpheus program; predicted by glimmer program.
  
  
 
0.906
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.