STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DEXAPutative glycosidase; Predicted by orpheus program; predicted by glimmer program. (547 aa)    
Predicted Functional Partners:
VVA0078
Putative 4-alpha-glucanotransferase; Predicted by orpheus program; predicted by glimmer program.
  
 
 0.936
T2462
Putative maltodextrin glucosidase; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 13 family.
  
  
 
0.928
PBPRB0321
Hypothetical protein; Predicted by orpheus program; predicted by glimmer program; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.922
VV20400
Hypothetical alpha-amylase; Predicted by orpheus program; predicted by glimmer program.
  
  
  0.911
Z5721
Putative alpha-galactosidase (melibiase); Predicted by orpheus program; predicted by glimmer program.
     
 0.903
ATU4665
Putative alpha-galactosidase; Predicted by orpheus program; predicted by glimmer program.
     
 0.903
XCC0748
Putative alpha-amylase; Predicted by orpheus program; predicted by glimmer program.
     
  0.900
S4512
Putative PTS system, trehalose-specific IIBCcomponent; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.762
YPO0854
Hypothetical ABC-type maltose transport systems,permease component; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.579
SPY1301
Hypothetical ABC-type sugar transport systems,permease components; Predicted by orpheus program; predicted by glimmer program.
 
  
 0.560
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.